{ "_id": "6ac634e5f511ae58c09a7bfe", "Package": "SEA", "Type": "Package", "Title": "Segregation Analysis", "Version": "2.0.1", "Date": "2022-3-28", "Maintainer": "Yuan-Ming Zhang ", "Contact": "Yuan-Ming Zhang ", "Authors@R": "c( person(\"Jing-Tian\", \"Wang\", role=\"aut\")\n, person(\"Ya-Wen\", \"Zhang\", role=\"aut\")\n, person(\"Yuan-Ming\", \"Zhang\", role=c(\"aut\",\"cre\"), email=\"soyzhang@mail.hzau.edu.cn\",\ncomment=c(ORCID=\"0000-0003-2317-2190\"))\n)", "Description": "A few major genes and a series of polygene are responsive\nfor each quantitative trait. Major genes are individually\nidentified while polygene is collectively detected. This is\nmixed major genes plus polygene inheritance analysis or\nsegregation analysis (SEA). In the SEA, phenotypes from a\nsingle or multiple bi-parental segregation populations along\nwith their parents are used to fit all the possible models and\nthe best model of the trait for population phenotypic\ndistributions is viewed as the model of the trait. There are\nfourteen types of population combinations available. Zhang\nYuan-Ming, Gai Jun-Yi, Yang Yong-Hua (2003,\n).", "License": "GPL (>= 2)", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-07 09:38:46 UTC", "User": "root" }, "Author": "Jing-Tian Wang [aut], Ya-Wen Zhang [aut], Yuan-Ming Zhang [aut,\ncre] ()", "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev", "Repository": "https://yuanmingzhang.r-universe.dev", "Date/Publication": "2022-03-30 06:30:12 UTC", "RemoteUrl": "https://github.com/cran/SEA", "RemoteRef": "HEAD", "RemoteSha": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "_user": "yuanmingzhang", "_type": "src", "_file": "SEA_2.0.1.tar.gz", "_fileid": "https://r2.ropensci.org/9b84f721a92f0ac10c87ea2fb5797d3fe0a02f063309ddb8b9823aed601f32b0", "_filesize": 735468, "_sha256": "9b84f721a92f0ac10c87ea2fb5797d3fe0a02f063309ddb8b9823aed601f32b0", "_expires": "2027-01-15T12:02:43.000Z", "_created": "2026-10-07T09:38:46.000Z", "_published": "2026-10-07T12:02:45.216Z", "_buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 112729125868, "time": 427, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11473966305" }, { "job": 112729125788, "time": 413, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11473454525" }, { "job": 112729125639, "time": 341, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11479928917" }, { "job": 112729125789, "time": 319, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11480992539" }, { "job": 112726331218, "time": 231, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11472957718" }, { "job": 112729125604, "time": 112, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11473577141" }, { "job": 112729125777, "time": 260, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11473691702" }, { "job": 112729125823, "time": 421, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11473454556" }, { "job": 112729125821, "time": 426, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11474275022" } ], "_upstream": "https://github.com/cran/SEA", "_commit": { "id": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "author": "Yuan-Ming Zhang ", "committer": "cran-robot ", "message": "version 2.0.1\n", "time": 1648621812 }, "_maintainer": { "name": "Yuan-Ming Zhang", "email": "soyzhang@mail.hzau.edu.cn", "login": "yuanmingzhang", "description": "", "uuid": 34569080, "orcid": "0000-0003-2317-2190" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "shiny", "role": "Depends" }, { "package": "MASS", "role": "Depends" }, { "package": "doParallel", "role": "Depends" }, { "package": "foreach", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "KScorrect", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "data.table", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "yuanmingzhang", "count": 3, "uuid": 34569080 } ], "_userbio": { "uuid": 34569080, "type": "user", "name": "IIIVmrMLM.QEI", "followers": 1 }, "_downloads": { "count": 305, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SEA" }, "_mentions": 238, "_searchresults": 18, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/SEA.html" ], "_realowner": "yuanmingzhang", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2018-05-24" }, { "version": "2.0", "date": "2021-02-27" }, { "version": "2.0.1", "date": "2022-03-30" } ], "_exports": [ "BCFFun", "BCFun", "BILFun", "DHFun", "F23Fun", "F2Fun", "G3DHFun", "G4F2Fun", "G4F3Fun", "G5BCFFun", "G5BCFun", "G5Fun", "G6FFun", "G6Fun", "PosPro", "SEA" ], "_datasets": [ { "name": "BCexdata", "title": "BC population dataset", "object": "BCexdata", "file": "BCexdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2" ], "rows": 201, "table": true, "tojson": true }, { "name": "BCFexdata", "title": "BCF population dataset", "object": "BCFexdata", "file": "BCFexdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2" ], "rows": 121, "table": true, "tojson": true }, { "name": "BILexdata", "title": "BIL population dataset", "object": "BILexdata", "file": "BILexdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1" ], "rows": 121, "table": true, "tojson": true }, { "name": "DHexdata", "title": "DH population dataset", "object": "DHexdata", "file": "DHexdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1" ], "rows": 202, "table": true, "tojson": true }, { "name": "F23exdata", "title": "F23 population dataset", "object": "F23exdata", "file": "F23exdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1" ], "rows": 183, "table": true, "tojson": true }, { "name": "F2exdata", "title": "F2 population dataset", "object": "F2exdata", "file": "F2exdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1" ], "rows": 321, "table": true, "tojson": true }, { "name": "G3DHexdata", "title": "G3DH population dataset", "object": "G3DHexdata", "file": "G3DHexdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2", "V3" ], "rows": 201, "table": true, "tojson": true }, { "name": "G4F2exdata", "title": "G4F2 population dataset", "object": "G4F2exdata", "file": "G4F2exdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2", "V3", "V4" ], "rows": 96, "table": true, "tojson": true }, { "name": "G4F3exdata", "title": "G4F3 population dataset", "object": "G4F3exdata", "file": "G4F3exdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2", "V3", "V4" ], "rows": 183, "table": true, "tojson": true }, { "name": "G5BCexdata", "title": "G5BC population dataset", "object": "G5BCexdata", "file": "G5BCexdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5" ], "rows": 201, "table": true, "tojson": true }, { "name": "G5BCFexdata", "title": "G5BCF population dataset", "object": "G5BCFexdata", "file": "G5BCFexdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5" ], "rows": 121, "table": true, "tojson": true }, { "name": "G5exdata", "title": "G5 population dataset", "object": "G5exdata", "file": "G5exdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5" ], "rows": 183, "table": true, "tojson": true }, { "name": "G6exdata", "title": "G6 population dataset", "object": "G6exdata", "file": "G6exdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5", "V6" ], "rows": 481, "table": true, "tojson": true }, { "name": "G6Fexdata", "title": "G6F population dataset", "object": "G6Fexdata", "file": "G6Fexdata.rda", "class": [ "data.table", "data.frame" ], "fields": [ "V1", "V2", "V3", "V4", "V5", "V6" ], "rows": 121, "table": true, "tojson": true } ], "_help": [ { "page": "SEA-package", "title": "Segregation Analysis", "topics": [ "SEA-package", "SEA" ] }, { "page": "BCexdata", "title": "BC population dataset", "topics": [ "B1", "B2", "BCexdata" ] }, { "page": "BCFexdata", "title": "BCF population dataset", "topics": [ "BCF-B12", "BCF-B22", "BCFexdata" ] }, { "page": "BCFFun", "title": "segregation analysis of BCF population", "topics": [ "BCFFun" ] }, { "page": "BCFun", "title": "segregation analysis of BC population", "topics": [ "BCFun" ] }, { "page": "BILexdata", "title": "BIL population dataset", "topics": [ "BIL", "BILexdata" ] }, { "page": "BILFun", "title": "segregation analysis of BIL population", "topics": [ "BILFun" ] }, { "page": "DHexdata", "title": "DH population dataset", "topics": [ "DH", "DHexdata" ] }, { "page": "DHFun", "title": "segregation analysis of DH population", "topics": [ "DHFun" ] }, { "page": "F23exdata", "title": "F23 population dataset", "topics": [ "F23", "F23exdata" ] }, { "page": "F23Fun", "title": "segregation analysis of F23 population", "topics": [ "F23Fun" ] }, { "page": "F2exdata", "title": "F2 population dataset", "topics": [ "F2", "F2exdata" ] }, { "page": "F2Fun", "title": "segregation analysis of F2 population", "topics": [ "F2Fun" ] }, { "page": "G3DHexdata", "title": "G3DH population dataset", "topics": [ "G3DH-DH", "G3DH-P1", "G3DH-P2", "G3DHexdata" ] }, { "page": "G3DHFun", "title": "segregation analysis of G3DH population", "topics": [ "G3DHFun" ] }, { "page": "G4F2exdata", "title": "G4F2 population dataset", "topics": [ "G4F2-F1", "G4F2-F2", "G4F2-P1", "G4F2-P2", "G4F2exdata" ] }, { "page": "G4F2Fun", "title": "segregation analysis of G4F2 population", "topics": [ "G4F2Fun" ] }, { "page": "G4F3exdata", "title": "G4F3 population dataset", "topics": [ "G4F3-F1", "G4F3-F23", "G4F3-P1", "G4F3-P2", "G4F3exdata" ] }, { "page": "G4F3Fun", "title": "segregation analysis of G4F3 population", "topics": [ "G4F3Fun" ] }, { "page": "G5BCexdata", "title": "G5BC population dataset", "topics": [ "G5BC-B1", "G5BC-B2", "G5BC-F1", "G5BC-P1", "G5BC-P2", "G5BCexdata" ] }, { "page": "G5BCFexdata", "title": "G5BCF population dataset", "topics": [ "G5BCF-B12", "G5BCF-B22", "G5BCF-F1", "G5BCF-P1", "G5BCF-P2", "G5BCFexdata" ] }, { "page": "G5BCFFun", "title": "segregation analysis of G5BCF population", "topics": [ "G5BCFFun" ] }, { "page": "G5BCFun", "title": "segregation analysis of G5BC population", "topics": [ "G5BCFun" ] }, { "page": "G5exdata", "title": "G5 population dataset", "topics": [ "G5-F1", "G5-F2", "G5-F23", "G5-P1", "G5-P2", "G5exdata" ] }, { "page": "G5Fun", "title": "segregation analysis of G5 population", "topics": [ "G5Fun" ] }, { "page": "G6exdata", "title": "G6 population dataset", "topics": [ "G6-B1", "G6-B2", "G6-F1", "G6-F2", "G6-P1", "G6-P2", "G6exdata" ] }, { "page": "G6Fexdata", "title": "G6F population dataset", "topics": [ "G6F-B12", "G6F-B22", "G6F-F1", "G6F-F23", "G6F-P1", "G6F-P2", "G6Fexdata" ] }, { "page": "G6FFun", "title": "segregation analysis of G6F population", "topics": [ "G6FFun" ] }, { "page": "G6Fun", "title": "segregation analysis of G6 population", "topics": [ "G6Fun" ] }, { "page": "PosPro", "title": "Posterior Probability", "topics": [ "PosPro" ] } ], "_rundeps": [ "base64enc", "bslib", "cachem", "cli", "codetools", "commonmark", "data.table", "digest", "doParallel", "fastmap", "fontawesome", "foreach", "fs", "glue", "htmltools", "httpuv", "iterators", "jquerylib", "jsonlite", "KScorrect", "later", "lifecycle", "magrittr", "MASS", "mclust", "memoise", "mime", "otel", "promises", "R6", "rappdirs", "Rcpp", "rlang", "sass", "shiny", "sourcetools", "withr", "xtable" ], "_score": 2.255272505103306, "_indexed": true, "_nocasepkg": "sea", "_universes": [ "yuanmingzhang" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.1", "date": "2026-10-07T09:45:25.000Z", "distro": "resolute", "commit": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "fileid": "https://r2.ropensci.org/b01fd15fc6f7d22f5d8b61dc644904ba856c5ce0ca3a9bf97f4e47916d31b031", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251" }, { "r": "4.6.1", "os": "linux", "version": "2.0.1", "date": "2026-10-07T09:45:23.000Z", "distro": "resolute", "commit": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "fileid": "https://r2.ropensci.org/acee85d6df253766df052747e5ebe00f6ccc721bb8c1b9554c75e441fdde81b5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251" }, { "r": "4.5.3", "os": "mac", "version": "2.0.1", "date": "2026-10-07T11:57:55.000Z", "commit": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "fileid": "https://r2.ropensci.org/37692bd69d89cb2834091a6bd2f1ebb7e346a0ea1a9566fcab0a5b36451e899f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251" }, { "r": "4.6.1", "os": "mac", "version": "2.0.1", "date": "2026-10-07T11:58:15.000Z", "commit": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "fileid": "https://r2.ropensci.org/5f900fa6e2c41b696573f0f2966f75fd8fcaba458256824370ae7203d465a6e1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.1", "date": "2026-10-07T09:45:38.000Z", "commit": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "fileid": "https://r2.ropensci.org/9abd46d1d2bffe4e6ffa04fcdebd73ab36f6070ada94c8b371498670a2e44fda", "status": "success", "buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251" }, { "r": "4.7.0", "os": "win", "version": "2.0.1", "date": "2026-10-07T09:44:39.000Z", "commit": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "fileid": "https://r2.ropensci.org/75bcd95a47c78798f11af866b3de2234e08528cfb78d27b89cc871b3cd246f13", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251" }, { "r": "4.5.3", "os": "win", "version": "2.0.1", "date": "2026-10-07T09:44:33.000Z", "commit": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "fileid": "https://r2.ropensci.org/56d382d083f6a5348a66328de6cc536a408286cdbf5446d8d6b479a9d7e51718", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251" }, { "r": "4.6.1", "os": "win", "version": "2.0.1", "date": "2026-10-07T09:44:40.000Z", "commit": "ef7fc9f003eb6c097ea659d3dbc632183b0b2673", "fileid": "https://r2.ropensci.org/c2f50da1c5a985afbd89a104ab85d0c70d3eb1619b808de7c6455973135a8b9a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/yuanmingzhang/actions/runs/37600569251" } ] }