Package: QTL.gCIMapping.GUI 2.1.1

QTL.gCIMapping.GUI: QTL Genome-Wide Composite Interval Mapping with Graphical User Interface

Conduct multiple quantitative trait loci (QTL) mapping under the framework of random-QTL-effect linear mixed model. First, each position on the genome is detected in order to obtain a negative logarithm P-value curve against genome position. Then, all the peaks on each effect (additive or dominant) curve are viewed as potential QTL, all the effects of the potential QTL are included in a multi-QTL model, their effects are estimated by empirical Bayes in doubled haploid population or by adaptive lasso in F2 population, and true QTL are identified by likelihood radio test. See Wen et al. (2018) <doi:10.1093/bib/bby058>.

Authors:Zhang Ya-Wen, Wen Yang-Jun, Wang Shi-Bo, and Zhang Yuan-Ming

QTL.gCIMapping.GUI_2.1.1.tar.gz
QTL.gCIMapping.GUI_2.1.1.zip(r-4.5)QTL.gCIMapping.GUI_2.1.1.zip(r-4.4)QTL.gCIMapping.GUI_2.1.1.zip(r-4.3)
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QTL.gCIMapping.GUI_2.1.1.tar.gz(r-4.5-noble)QTL.gCIMapping.GUI_2.1.1.tar.gz(r-4.4-noble)
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QTL.gCIMapping.GUI.pdf |QTL.gCIMapping.GUI.html✨
QTL.gCIMapping.GUI/json (API)

# Install 'QTL.gCIMapping.GUI' in R:
install.packages('QTL.gCIMapping.GUI', repos = c('https://yuanmingzhang.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • gen - Genotype example data
  • genf2 - Genotype example data
  • map - Map example data
  • mapf2 - Map example data
  • phe - Phenotype example data
  • phef2 - Phenotype example data

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

6 exports 0.00 score 62 dependencies 6 scripts 215 downloads

Last updated 4 years agofrom:5d306e863d. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 27 2024
R-4.5-win-x86_64OKAug 27 2024
R-4.5-linux-x86_64OKAug 27 2024
R-4.4-win-x86_64OKAug 27 2024
R-4.4-mac-x86_64OKAug 27 2024
R-4.4-mac-aarch64OKAug 27 2024
R-4.3-win-x86_64OKAug 27 2024
R-4.3-mac-x86_64OKAug 27 2024
R-4.3-mac-aarch64OKAug 27 2024

Exports:markerinsertQTL.gCIMapping.GUIWangFWangSWenFWenS

Dependencies:base64encbslibcachemcellrangerclicodetoolscommonmarkcpp11crayondata.tabledigestdoParallelfansifastmapfontawesomeforeachfsglmnetgluehmshtmltoolshttpuviteratorsjquerylibjsonlitelarslaterlatticelifecyclemagrittrMASSMatrixmemoisemimeopenxlsxpillarpkgconfigprettyunitsprogresspromisesqtlQTL.gCIMappingR6rappdirsRcppRcppEigenreadxlrematchrlangsassshapeshinysourcetoolsstringistringrsurvivaltibbleutf8vctrswithrxtablezip